SNP Profiles of CC 137 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
1._RUQ_1637	_	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
2._RUQ_1637	CG	CT	_	_	TT	_	_	_	_	CT	AG	_	_	_
3._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
4._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
5._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
6._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
7._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
8._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
9._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
10._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
11._RUQ_1637	CG	_	_	_	TT	_	CT	_	AA	_	AG	_	_	_
12._CC_137	GG	CT	TT	AA	GT	CC	CT	AA	AA	CT	AA	CC	AA	GG
13._GC-01-134-7-11	GG	CT	TT	AA	GT	CC	CT	AA	AA	CT	AA	CC	AA	GG
14._RUQ_1637	CC	AG	AA	AA	AA	_	_	AA	AA	AG	AG	AG	AA	GG
15._MITC-000809	CC	AG	AA	AA	AA	_	_	AA	AA	AG	AG	AG	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	GG	GG	AG	CT	CC	TT	CT	CC	AG	GG	CT	AA
1._RUQ_1637	TT	CC	GG	GG	AG	CT	CC	TT	CT	CC	AG	GG	CT	AA
2._RUQ_1637	_	CC	GG	GG	_	CT	CC	TT	-	CC	AG	_	CT	AA
3._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
4._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
5._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
6._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
7._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
8._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
9._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
10._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
11._RUQ_1637	_	_	GG	GG	AG	_	CC	_	_	AC	_	_	_	AA
12._CC_137	TT	CC	CC	GT	AA	CC	CC	GT	CT	CC	AA	GG	CC	AG
13._GC-01-134-7-11	TT	CC	CC	GT	AA	CC	CC	GT	CT	CC	AA	GG	CC	AG
14._RUQ_1637	AA	GG	CC	CC	_	AG	CC	AA	_	CC	_	GG	AG	AA
15._MITC-000809	AA	GG	CC	CC	_	AG	CC	AA	_	CC	_	GG	AG	AA

	29	30	31	32	33
_Input profile	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1637	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1637	AC	GT	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CC_137	AC	GT	CC	_	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._GC-01-134-7-11	AC	GT	CC	_	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_1637	_	_	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CC_137	AA	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-01-134-7-11	AA	GG	AC	AT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_1637	AC	AC	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._MITC-000809	AC	AC	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CC_137

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._CC_137 RUQ_1637

identical
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._CC_137 RUQ_1637

97.2 %
18 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

4._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

5._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

8._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

9._CC_137

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

10._CC_137 GC-01-134-7-11

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

11._CC_137 RUQ_1637

91.7 %
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

12._CC_137

74.2 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 4

Dapeng Zhang, 2016

13._CC_137 GC-01-134-7-11

74.2 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

14._CC_137 RUQ_1637

50 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._CC_137 MITC-000809

50 %
28 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1442	3	TcSNP1414	4	TcSNP1350	5	TcSNP1253
6	TcSNP1165	7	TcSNP1144	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP929	15	TcSNP917
16	TcSNP891	17	TcSNP872	18	TcSNP723	19	TcSNP645	20	TcSNP619
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP242	28	TcSNP230	29	TcSNP193	30	TcSNP150
31	TcSNP144	32	TcSNP32	33	TcSNP25